FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22775658
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGTA138400.010.18064494-95
GCGTCGT179900.09.52271594-95
AGCGTCG204800.09.50190494-95
CGTGTAG130400.09.36574294-95
GTCGTGT155900.09.32742994-95
CGTCGTG167600.08.98818294-95
AGAGCGT280050.08.73044794-95
ATCGGAA498100.08.59120194-95
GAGCGTC249200.08.59079694-95
TCGGAAG481900.08.45597894-95
AAGAGCG324550.08.44120394-95
GATCGGA533800.08.20803294-95
CGGAAGA469400.08.00286594-95
AGATCGG593900.07.801496594-95
TAGATCG185600.07.399570594-95
AAGATCG194350.06.931946394-95
CAGATCG194150.06.718798694-95
GAGATCG214500.06.413689694-95
GTGTAGG166200.06.218919394-95
GAAGAGC558500.05.70934194-95
Produced by FastQC (version 0.11.5)