EGAF00004720759 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720759
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22517308
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	10905	0.0	9.696505	94-95
GCGTCGT	11635	0.0	9.31278	94-95
TCGTGTA	8375	0.0	9.192657	94-95
AGCGTCG	13085	0.0	9.134297	94-95
GTCGTGT	9875	0.0	9.071626	94-95
GATCGGA	33210	0.0	8.843628	94-95
AGATCGG	37835	0.0	8.616706	94-95
TAGATCG	11700	0.0	8.509598	94-95
ATCGGAA	30515	0.0	8.355399	94-95
GAGCGTC	16830	0.0	8.061816	94-95
TCGGAAG	30975	0.0	7.824737	94-95
CGTGTAG	8715	0.0	7.770668	94-95
AGAGCGT	18290	0.0	7.6131573	94-95
AAGAGCG	21525	0.0	7.48458	94-95
CGGAAGA	31580	0.0	7.456627	94-95
CAGATCG	14665	0.0	6.83772	94-95
AAGATCG	13440	0.0	5.781352	94-95
GAGATCG	16245	0.0	5.5875897	94-95