FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20862542
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA389600.09.00053994-95
GATCGGA416000.08.6462294-95
ACACGTC133700.08.50571994-95
CGTCTGA96900.08.40383194-95
TCGGAAG379650.08.21710694-95
AGATCGG464850.08.17683994-95
TAGATCG146800.08.07014794-95
CACACGT167350.07.816869394-95
CGGAAGA369200.07.56870794-95
ACGTCTG121950.07.456309394-95
GCACACG189800.07.43014394-95
CACGTCT144400.07.05337694-95
AAGATCG151800.06.80337594-95
AGAGCAC325100.06.200084794-95
CAGATCG151800.06.146497294-95
AGCACAC280950.05.805433394-95
GAGCACA328050.05.796948494-95
GAAGAGC460350.05.7348794-95
GAGATCG188750.05.635052794-95
AAGAGCA432800.05.392289694-95
Produced by FastQC (version 0.11.5)