FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20862542
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG128200.09.78740994-95
GCGTCGT136000.09.61049294-95
AGCGTCG154450.09.60104594-95
TCGTGTA104500.09.369204594-95
GTCGTGT118000.09.2639894-95
ATCGGAA382600.09.10564794-95
GAGCGTC196000.08.98429494-95
AGAGCGT215500.08.71167494-95
GATCGGA414450.08.66391494-95
AAGAGCG251650.08.55565194-95
CGTGTAG102300.08.45566194-95
TCGGAAG370100.08.2124694-95
AGATCGG462450.08.10893894-95
CGGAAGA364700.07.59774394-95
TAGATCG144800.07.58219994-95
AAGATCG156050.06.6396494-95
CAGATCG165600.06.371540594-95
GTGTAGG136800.06.14948894-95
GAAGAGC453900.05.696269594-95
GAGATCG177150.05.566654792-93
Produced by FastQC (version 0.11.5)