FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22701385
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG142750.010.43248194-95
TCGTGTA94100.010.14688194-95
GCGTCGT125150.09.66013294-95
CGTCGTG116550.09.63928994-95
GAGCGTC183050.09.43323994-95
GTCGTGT107800.09.2539494-95
AGAGCGT204900.09.14694-95
ATCGGAA378100.09.09615994-95
GATCGGA408800.08.90691894-95
TCGGAAG368800.08.70082994-95
CGTGTAG92550.08.6743494-95
AAGAGCG242200.08.49258594-95
AGATCGG461100.08.45297594-95
TAGATCG142550.08.31437294-95
CGGAAGA366600.08.09866994-95
AAGATCG157850.07.04202394-95
GAGATCG180100.06.699558394-95
CAGATCG166700.06.14098294-95
GAAGAGC465150.05.596463794-95
GTGTAGG133000.05.2861194-95
Produced by FastQC (version 0.11.5)