FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23704932
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA297850.08.77592894-95
GATCGGA315800.08.54022994-95
TAGATCG114000.08.45521294-95
TCGGAAG299200.08.35545494-95
AGATCGG356300.08.23580394-95
ACACGTC114250.07.48082794-95
CGGAAGA306500.07.33538494-95
CGTCTGA85350.07.28787894-95
ACGTCTG109400.06.814212394-95
CACACGT146900.06.73934394-95
GCACACG169850.06.55557294-95
CACGTCT127300.06.396892594-95
CAGATCG137350.06.136249594-95
AAGATCG125800.05.81263994-95
GAGATCG159900.05.68661294-95
AGAGCAC286600.05.05308994-95
Produced by FastQC (version 0.11.5)