EGAF00004720767 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720767
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23704932
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	9595	0.0	9.708401	94-95
CGTCGTG	9365	0.0	9.34233	94-95
GTCGTGT	8760	0.0	9.25317	94-95
ATCGGAA	25955	0.0	9.1410055	94-95
AGCGTCG	10975	0.0	9.050381	94-95
GATCGGA	27490	0.0	8.967571	94-95
TCGTGTA	7770	0.0	8.809366	94-95
AGATCGG	31545	0.0	8.655037	94-95
TCGGAAG	26095	0.0	8.421407	94-95
TAGATCG	9885	0.0	8.356269	94-95
CGTGTAG	8195	0.0	8.226904	94-95
AAGAGCG	18580	0.0	8.074338	94-95
AGAGCGT	15820	0.0	7.93775	94-95
GAGCGTC	14280	0.0	7.4422784	94-95
CGGAAGA	27110	0.0	7.223359	94-95
AAGATCG	11565	0.0	6.2746215	94-95
CAGATCG	13725	0.0	6.1308327	94-95
GAGATCG	14760	0.0	5.265076	94-95