FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21765422
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG361200.09.42940394-95
GATCGGA316650.09.26339694-95
ATCGGAA294050.09.21610294-95
TCGGAAG294550.09.03112494-95
TAGATCG116650.08.938457594-95
CGGAAGA293700.07.56119694-95
ACACGTC102500.07.414961394-95
CAGATCG135100.06.996978394-95
GCACACG154500.06.8562994-95
ACCGCGC43950.06.80931571
CACACGT133100.06.548936494-95
AAGATCG124400.06.453259594-95
ACGTCTG100200.06.42368794-95
CACGTCT114350.06.4180894-95
CGTCTGA77850.06.28479994-95
GAGATCG147750.05.915658594-95
GAAGAGC406850.05.324064794-95
AGAGCAC263650.05.315046394-95
AGCACAC237400.05.312471494-95
AAGAGCA382500.05.08551994-95
Produced by FastQC (version 0.11.5)