FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720796

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720796
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19386586
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA235550.08.67733294-95
GATCGGA251500.08.40986394-95
AGATCGG285400.08.30822294-95
TCGGAAG239850.08.21529994-95
TAGATCG96850.08.17728194-95
CGGAAGA244050.07.24806594-95
CGTCTGA74150.06.81130894-95
AAGATCG99450.06.771355694-95
ACACGTC90150.06.733429494-95
CAGATCG109200.06.31876894-95
ACGTCTG87850.06.01901194-95
GAGATCG122950.05.9399794-95
GCACACG133150.05.93014394-95
CACACGT114250.05.914945694-95
CACGTCT100550.05.423852494-95
AGAGCAC244200.05.165686694-95
Produced by FastQC (version 0.11.5)