EGAF00004720797 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720797
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19386586
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	9330	0.0	9.51945	94-95
ATCGGAA	22925	0.0	8.608225	94-95
AGATCGG	27820	0.0	8.314262	94-95
GATCGGA	24635	0.0	8.309533	94-95
GCGTCGT	8185	0.0	8.268908	94-95
TAGATCG	9130	0.0	7.985268	94-95
CGTCGTG	7965	0.0	7.9606295	94-95
GAGCGTC	12360	0.0	7.93512	94-95
TCGGAAG	22830	0.0	7.801485	94-95
AAGAGCG	16150	0.0	7.661029	94-95
GTCGTGT	7685	0.0	7.632644	94-95
TCGTGTA	6700	0.0	7.4433155	94-95
AGAGCGT	13610	0.0	7.3808117	94-95
CGGAAGA	23460	0.0	7.3085485	94-95
CGTGTAG	7205	0.0	6.8886514	94-95
AAGATCG	9970	0.0	6.6217313	94-95
CAGATCG	11295	0.0	6.28647	94-95
GAGATCG	11830	0.0	5.680984	94-95