EGAF00004720806 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720806
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24615165
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	38070	0.0	9.298987	94-95
ATCGGAA	35275	0.0	8.945382	94-95
AGATCGG	43095	0.0	8.572818	94-95
TAGATCG	13685	0.0	8.206486	94-95
TCGGAAG	34815	0.0	8.170174	94-95
ACACGTC	12645	0.0	7.9989257	94-95
CGGAAGA	35130	0.0	7.7589808	94-95
CACACGT	16055	0.0	7.349994	94-95
CGTCTGA	9610	0.0	7.1896954	94-95
AAGATCG	15690	0.0	7.1880574	94-95
GCACACG	19075	0.0	7.1572165	94-95
ACGTCTG	12375	0.0	6.523409	94-95
CACGTCT	14535	0.0	6.419754	94-95
CAGATCG	15380	0.0	6.144445	92-93
GAGATCG	18155	0.0	5.6628175	94-95
AGAGCAC	31795	0.0	5.5783105	94-95
AGCACAC	28110	0.0	5.3128886	94-95