FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24615165
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGT125800.010.12580994-95
CGTCGTG117700.09.73231594-95
AGCGTCG142300.09.61973694-95
GATCGGA384250.09.2278594-95
TCGTGTA95700.08.93997194-95
ATCGGAA352400.08.90866294-95
GTCGTGT108950.08.72525994-95
TAGATCG135000.08.64357394-95
AGATCGG434000.08.63002594-95
GAGCGTC181900.08.21795194-95
CGTGTAG96550.08.196671594-95
AGAGCGT200200.08.11965694-95
TCGGAAG353100.07.915077794-95
AAGAGCG238800.07.77252794-95
CGGAAGA351350.07.64335594-95
AAGATCG157250.06.574218894-95
CAGATCG159950.06.35923894-95
GAGATCG183150.05.52774894-95
GTGTAGG139650.05.326586294-95
Produced by FastQC (version 0.11.5)