FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26764914
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA484650.08.51485694-95
ATCGGAA451150.08.46293394-95
AGATCGG542000.08.13520394-95
ACACGTC167000.07.990531494-95
TCGGAAG444600.07.98946994-95
CGTCTGA122000.07.6876494-95
TAGATCG161300.07.62519994-95
CGGAAGA443850.07.227280694-95
CACACGT210450.07.130564794-95
GCACACG242450.07.04145694-95
ACGTCTG156250.06.97506894-95
CACGTCT181200.06.879500494-95
AAGATCG179500.06.41553894-95
CAGATCG190250.06.165354394-95
AGAGCAC400900.05.78055594-95
AGCACAC347950.05.73215994-95
GAGATCG231850.05.68383894-95
GAGCACA407800.05.310108794-95
AAGAGCA530650.05.13228894-95
GAAGAGC575300.05.11779894-95
Produced by FastQC (version 0.11.5)