EGAF00004720836 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720836
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21286579
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	28055	0.0	8.487498	94-95
AGATCGG	33805	0.0	8.399226	94-95
GATCGGA	29790	0.0	8.383672	94-95
TCGGAAG	28410	0.0	7.9803357	94-95
TAGATCG	10355	0.0	7.9325905	94-95
ACACGTC	10820	0.0	7.7013855	94-95
CGGAAGA	29245	0.0	7.2735333	94-95
CACACGT	13675	0.0	6.8921103	94-95
AAGATCG	12155	0.0	6.718812	94-95
ACGTCTG	10285	0.0	6.6708717	94-95
CGTCTGA	8400	0.0	6.387313	94-95
GCACACG	16095	0.0	6.136085	94-95
CAGATCG	12705	0.0	6.0168643	94-95
CACGTCT	11860	0.0	5.905088	94-95
GAGATCG	15490	0.0	5.8546505	94-95
AGAGCAC	27115	0.0	5.227015	94-95
AGCACAC	23680	0.0	5.0428414	94-95