EGAF00004720845 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720845
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22903906
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	10915	0.0	9.862546	94-95
AGCGTCG	13085	0.0	9.716158	94-95
GCGTCGT	11550	0.0	9.649513	94-95
GTCGTGT	10225	0.0	9.249842	94-95
TCGTGTA	9035	0.0	9.179348	94-95
GATCGGA	35470	0.0	8.803365	94-95
ATCGGAA	33030	0.0	8.798982	94-95
GAGCGTC	16520	0.0	8.544584	94-95
AGATCGG	40170	0.0	8.447748	94-95
TCGGAAG	32725	0.0	8.430767	94-95
CGTGTAG	9100	0.0	8.278132	94-95
AGAGCGT	18730	0.0	8.170763	94-95
TAGATCG	13015	0.0	8.14339	94-95
AAGAGCG	21800	0.0	7.8485703	94-95
CGGAAGA	32735	0.0	7.7458057	94-95
AAGATCG	14550	0.0	6.2879963	94-95
CAGATCG	14355	0.0	5.859691	92-93
GAGATCG	16440	0.0	5.3049197	94-95
GTGTAGG	12910	0.0	5.006765	94-95