FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21900727
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC154350.09.57244994-95
ATCGGAA470050.09.08120294-95
GATCGGA507550.09.01866394-95
TCGGAAG452000.08.48737494-95
AGATCGG565200.08.3761594-95
CACGTCT156400.08.30787494-95
CGTCTGA110450.08.17254294-95
CACACGT190300.08.15105294-95
CGGAAGA441250.08.06429594-95
ACGTCTG136850.07.915153594-95
TAGATCG182800.07.66681794-95
GCACACG221900.07.57905894-95
AGAGCAC368850.06.852217794-95
AAGATCG179900.06.56242794-95
CAGATCG176800.06.55657294-95
GAGATCG214700.06.30640894-95
AGCACAC317000.06.122123794-95
GAGCACA364600.06.065579494-95
AAGAGCA478250.05.860926694-95
GAAGAGC527800.05.724756294-95
Produced by FastQC (version 0.11.5)