EGAF00004720874 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720874
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20958165
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	28875	0.0	9.070244	94-95
GATCGGA	31090	0.0	8.889916	94-95
AGATCGG	34985	0.0	8.259888	94-95
TCGGAAG	28390	0.0	8.171365	94-95
TAGATCG	11500	0.0	7.680873	94-95
ACACGTC	11040	0.0	7.3771825	94-95
CACACGT	13770	0.0	7.087178	94-95
CGGAAGA	28940	0.0	7.0314965	94-95
ACGTCTG	10305	0.0	6.6360545	94-95
CGTCTGA	8675	0.0	6.5691204	94-95
GCACACG	15730	0.0	6.4758086	94-95
CAGATCG	12985	0.0	6.3087397	94-95
CACGTCT	11860	0.0	6.2264595	94-95
GAGATCG	13980	0.0	6.063544	94-95
AAGATCG	12250	0.0	5.931312	94-95
AGAGCAC	27775	0.0	5.6935825	94-95
AGCACAC	24285	0.0	5.1429596	94-95