EGAF00004720875 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720875
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20958165
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	11895	0.0	9.10819	94-95
CGTCGTG	9815	0.0	9.10184	94-95
ATCGGAA	28780	0.0	9.0727415	94-95
GATCGGA	30995	0.0	8.884304	94-95
GCGTCGT	10410	0.0	8.627257	94-95
TCGTGTA	8130	0.0	8.56266	94-95
GTCGTGT	9270	0.0	8.534855	94-95
AGAGCGT	16790	0.0	8.462177	94-95
TAGATCG	10775	0.0	8.224759	94-95
AGATCGG	34745	0.0	8.212631	94-95
GAGCGTC	15360	0.0	8.198158	94-95
CGTGTAG	8170	0.0	8.0263605	94-95
AAGAGCG	19985	0.0	8.000969	94-95
TCGGAAG	28570	0.0	7.9585385	94-95
CGGAAGA	28910	0.0	6.8951783	94-95
CAGATCG	13665	0.0	5.807223	94-95
AAGATCG	12055	0.0	5.7940974	92-93
GAGATCG	14795	0.0	5.781216	94-95