EGAF00004720878 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720878
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23892874
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	36790	0.0	8.873259	94-95
ATCGGAA	34295	0.0	8.729604	94-95
AGATCGG	41480	0.0	8.373671	94-95
TAGATCG	13170	0.0	8.184278	94-95
TCGGAAG	34505	0.0	8.002172	94-95
ACACGTC	12695	0.0	7.7611423	94-95
CGGAAGA	35025	0.0	7.2868624	94-95
CGTCTGA	9765	0.0	7.099387	94-95
CACACGT	15880	0.0	6.907195	94-95
GCACACG	19235	0.0	6.5540924	94-95
ACGTCTG	11995	0.0	6.4129086	94-95
CACGTCT	14010	0.0	6.2870374	94-95
AAGATCG	15560	0.0	6.1642756	94-95
CAGATCG	14230	0.0	5.92289	94-95
AGAGCAC	31665	0.0	5.8632383	94-95
GAGATCG	17805	0.0	5.6270494	94-95
AGCACAC	27950	0.0	5.2155104	94-95