EGAF00004720879 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720879
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23892874
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	13970	0.0	9.406973	94-95
GCGTCGT	12520	0.0	9.319623	94-95
CGTCGTG	11680	0.0	8.891187	94-95
GATCGGA	36730	0.0	8.870288	94-95
GTCGTGT	11065	0.0	8.698107	94-95
ATCGGAA	34145	0.0	8.678816	94-95
TCGTGTA	9850	0.0	8.661225	94-95
AGATCGG	41465	0.0	8.333048	94-95
AGAGCGT	20200	0.0	8.329196	94-95
GAGCGTC	17845	0.0	8.216555	94-95
TCGGAAG	34250	0.0	8.048567	94-95
CGTGTAG	9580	0.0	7.9875116	94-95
AAGAGCG	23610	0.0	7.931428	94-95
TAGATCG	12895	0.0	7.445282	94-95
CGGAAGA	34280	0.0	7.3760176	94-95
AAGATCG	14985	0.0	6.2324233	94-95
CAGATCG	15460	0.0	6.08705	94-95
GAGATCG	17625	0.0	5.568549	94-95
GTGTAGG	13635	0.0	5.2809086	94-95