FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21757975
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA409100.08.69985794-95
ATCGGAA381450.08.6208994-95
AGATCGG461100.08.43448794-95
TAGATCG142250.08.0451694-95
CGTCTGA102000.07.91441294-95
TCGGAAG370750.07.83222694-95
ACACGTC134950.07.82937494-95
CGGAAGA365300.07.71508994-95
AAGATCG154950.07.217208494-95
ACGTCTG124250.07.20418594-95
CACACGT169800.07.04746294-95
GCACACG192500.07.005796494-95
CACGTCT146800.06.890067694-95
CAGATCG156000.06.696810794-95
AGAGCAC324000.06.22160794-95
GAGATCG186600.05.853102794-95
AGCACAC282600.05.847591494-95
GAGCACA330200.05.637400694-95
AAGAGCA437250.05.478999694-95
GAAGAGC471050.05.4336594-95
Produced by FastQC (version 0.11.5)