FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23060441
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA389250.09.49853594-95
ATCGGAA358600.09.12581894-95
AGATCGG437300.09.01380294-95
TCGGAAG351100.08.71244194-95
ACACGTC116550.08.53138594-95
TAGATCG144100.08.51421194-95
CGGAAGA347900.08.21277494-95
CGTCTGA87350.07.60699294-95
CACGTCT125300.07.537890494-95
GCACACG175500.07.28835494-95
CACACGT153200.07.048073394-95
ACGTCTG108800.06.82705394-95
CAGATCG153000.06.73156694-95
AAGATCG150200.06.588460494-95
GAGATCG174350.06.16586694-95
AGAGCAC309150.06.04120194-95
AGCACAC266150.05.679770594-95
GAAGAGC450050.05.341540394-95
AAGAGCA433800.05.295459394-95
GAGCACA314400.05.177968594-95
Produced by FastQC (version 0.11.5)