FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23060441
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG134850.010.10877194-95
TCGTGTA87750.09.82419494-95
GCGTCGT116000.09.47895594-95
GATCGGA374350.09.38269994-95
CGTCGTG107500.09.32269494-95
GTCGTGT100250.09.16777794-95
ATCGGAA343800.09.14575594-95
AGATCGG422950.08.92220894-95
AAGAGCG232200.08.74462994-95
GAGCGTC171050.08.59419294-95
CGTGTAG87350.08.40103994-95
TCGGAAG332550.08.21969794-95
TAGATCG137900.08.21469794-95
AGAGCGT190950.08.12140194-95
CGGAAGA338600.08.09387194-95
AAGATCG149750.06.62898394-95
CAGATCG157450.06.531045494-95
GAGATCG163400.06.075215394-95
GTGTAGG130750.05.12206294-95
GAAGAGC455450.05.037022694-95
Produced by FastQC (version 0.11.5)