EGAF00004720903 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720903
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21188486
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	11885	0.0	9.831872	94-95
GTCGTGT	10125	0.0	9.805089	94-95
AGCGTCG	13320	0.0	9.610695	94-95
CGTCGTG	11065	0.0	9.4872675	94-95
TCGTGTA	8870	0.0	9.210964	94-95
ATCGGAA	33510	0.0	9.079146	94-95
GATCGGA	36635	0.0	8.875188	94-95
TCGGAAG	33315	0.0	8.683159	94-95
AGATCGG	41245	0.0	8.533893	94-95
TAGATCG	12750	0.0	8.456993	94-95
AGAGCGT	19125	0.0	8.382482	94-95
AAGAGCG	22120	0.0	8.224584	94-95
GAGCGTC	17260	0.0	8.063565	94-95
CGGAAGA	33165	0.0	8.027787	94-95
CGTGTAG	8860	0.0	6.9696326	94-95
AAGATCG	14375	0.0	6.4435773	94-95
CAGATCG	15240	0.0	6.389534	94-95
GAGATCG	16250	0.0	5.6708565	94-95
GTGTAGG	12655	0.0	5.254921	94-95