FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20987781
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC129550.09.24755194-95
ATCGGAA408050.09.20904594-95
TCGGAAG392700.09.17030294-95
GATCGGA444950.09.07446894-95
CACACGT164550.08.69345194-95
AGATCGG499900.08.68441994-95
CGTCTGA96650.08.639997594-95
CGGAAGA380750.08.54221294-95
TAGATCG160500.08.45461494-95
GCACACG191400.07.73420194-95
ACGTCTG116550.07.55152194-95
AAGATCG168750.07.310252794-95
CACGTCT134750.06.84847194-95
CAGATCG159250.06.465216694-95
GAGATCG184650.06.346736494-95
GAAGAGC462600.06.266692694-95
AGAGCAC324350.06.19501494-95
AGCACAC280250.06.08633894-95
AAGAGCA434100.05.72722694-95
GAGCACA323700.05.577181394-95
Produced by FastQC (version 0.11.5)