FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20987781
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCGTG123650.010.563807594-95
AGCGTCG151450.010.02036394-95
GTCGTGT111250.09.92669894-95
GCGTCGT131300.09.514214594-95
ATCGGAA393150.09.06118294-95
GATCGGA430950.08.97730794-95
TCGTGTA97200.08.94265994-95
AAGAGCG250050.08.77600894-95
CGTGTAG95800.08.77585994-95
TCGGAAG371700.08.58733894-95
GAGCGTC191250.08.58081394-95
AGATCGG481950.08.48068294-95
CGGAAGA378150.08.32781994-95
TAGATCG148700.07.93774894-95
AGAGCGT209550.07.922119694-95
AAGATCG163250.06.92477594-95
CAGATCG163550.06.636170494-95
GTGTAGG130850.06.243622394-95
GAGATCG179050.06.088218794-95
GAAGAGC462000.06.029869694-95
Produced by FastQC (version 0.11.5)