FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19625772
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG381550.09.73375894-95
GATCGGA332900.09.66637394-95
ATCGGAA307000.09.60838694-95
TCGGAAG296950.09.2303194-95
CGGAAGA293650.08.978456594-95
ACACGTC97350.08.70261894-95
TAGATCG127750.08.67508294-95
CAGATCG127750.08.11779794-95
CGTCTGA71000.07.854655794-95
CACACGT126300.07.384258394-95
CACGTCT104850.07.220044694-95
GCACACG143100.07.213852494-95
ACGTCTG92700.07.193565494-95
AAGATCG138450.07.130467494-95
GAGATCG147250.06.575404694-95
AGAGCAC263400.05.757086394-95
AGCACAC226350.05.514712394-95
GAAGAGC390200.05.49184394-95
AAGAGCA360600.05.179247494-95
GAGCACA267700.05.13272394-95
Produced by FastQC (version 0.11.5)