EGAF00004720921 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720921
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20038373
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCGTG	9855	0.0	9.711742	94-95
AGCGTCG	11835	0.0	9.41138	94-95
GCGTCGT	10150	0.0	9.406081	94-95
TCGTGTA	7715	0.0	9.388856	94-95
GTCGTGT	8935	0.0	9.249823	94-95
GATCGGA	33035	0.0	9.051075	94-95
ATCGGAA	30255	0.0	9.011425	94-95
AGATCGG	37590	0.0	8.9588585	94-95
GAGCGTC	14955	0.0	8.527792	94-95
AGAGCGT	16855	0.0	8.510535	94-95
AAGAGCG	20315	0.0	8.48728	94-95
TCGGAAG	29460	0.0	8.20661	94-95
TAGATCG	11720	0.0	8.125788	94-95
CGTGTAG	8010	0.0	8.094293	94-95
CGGAAGA	30060	0.0	7.9084945	94-95
AAGATCG	13295	0.0	7.020256	94-95
CAGATCG	13810	0.0	6.586487	94-95
GAGATCG	14745	0.0	5.7017374	94-95
GTGTAGG	11355	0.0	5.124219	94-95