EGAF00004720950 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720950
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22121988
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	31155	0.0	9.086774	94-95
TAGATCG	12180	0.0	8.911076	94-95
GATCGGA	33255	0.0	8.805771	94-95
AGATCGG	37610	0.0	8.613353	94-95
TCGGAAG	30625	0.0	8.60036	94-95
CGTCTGA	8585	0.0	7.524711	94-95
ACACGTC	11245	0.0	7.518855	94-95
CGGAAGA	31335	0.0	7.4201756	94-95
ACGTCTG	10765	0.0	6.839256	94-95
CACGTCT	12505	0.0	6.7232733	94-95
AAGATCG	13470	0.0	6.62951	94-95
CACACGT	14500	0.0	6.338758	94-95
CAGATCG	13520	0.0	6.306363	94-95
GCACACG	16800	0.0	6.2060666	94-95
AGAGCAC	28690	0.0	5.7532797	94-95
GAGATCG	15610	0.0	5.7054453	94-95
GAGCACA	29900	0.0	5.178901	94-95
AGCACAC	25505	0.0	5.0749574	94-95