EGAF00004720951 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720951
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22121988
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	12265	0.0	9.510639	94-95
TCGTGTA	8390	0.0	9.400952	94-95
ATCGGAA	30830	0.0	9.100643	94-95
GCGTCGT	10825	0.0	9.020065	94-95
CGTCGTG	10485	0.0	8.904712	94-95
GTCGTGT	9535	0.0	8.820199	94-95
GATCGGA	33165	0.0	8.732116	94-95
AGAGCGT	17795	0.0	8.597726	94-95
GAGCGTC	15940	0.0	8.569891	94-95
AGATCGG	37915	0.0	8.56551	94-95
AAGAGCG	20830	0.0	8.451323	94-95
TAGATCG	11745	0.0	8.434878	94-95
TCGGAAG	31100	0.0	8.357044	94-95
CGTGTAG	8690	0.0	8.146897	94-95
CGGAAGA	31630	0.0	7.308183	94-95
AAGATCG	13240	0.0	6.6749916	94-95
CAGATCG	14535	0.0	6.5379367	94-95
GAGATCG	16075	0.0	5.7046905	94-95
GTGTAGG	12185	0.0	5.2447224	94-95