FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19918540
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACACGTC133050.08.42314894-95
ATCGGAA351800.08.38924194-95
GATCGGA377900.08.12398294-95
TCGGAAG344400.07.95591294-95
CGTCTGA95750.07.8608294-95
AGATCGG421000.07.636316394-95
CACGTCT137100.07.498903894-95
TAGATCG132850.07.381350594-95
CGGAAGA347850.07.3787294-95
CACACGT162900.07.214918694-95
ACGTCTG120700.07.12112594-95
GCACACG190400.06.95848394-95
AAGATCG133350.06.14289994-95
CAGATCG152950.05.976660794-95
AGCACAC269400.05.84336994-95
AGAGCAC308450.05.765598394-95
GAGATCG160900.05.62232994-95
GAGCACA319550.05.45386794-95
GAAGAGC435850.05.164385394-95
AAGAGCA404050.05.02433294-95
Produced by FastQC (version 0.11.5)