EGAF00004720992 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004720992
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20005643
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	28050	0.0	8.440306	94-95
TCGGAAG	28040	0.0	8.265472	94-95
GATCGGA	29670	0.0	8.091509	94-95
TAGATCG	11030	0.0	7.9226084	94-95
ACACGTC	10195	0.0	7.8727303	94-95
CGGAAGA	27930	0.0	7.7793984	94-95
AGATCGG	33085	0.0	7.7443724	94-95
GCACACG	14755	0.0	7.2099905	94-95
CACACGT	12935	0.0	6.921031	94-95
ACGTCTG	9630	0.0	6.904427	94-95
CGTCTGA	7790	0.0	6.8282037	94-95
CACGTCT	10825	0.0	6.668706	94-95
AAGATCG	12345	0.0	6.6170316	94-95
CAGATCG	11290	0.0	5.720986	94-95
GAGATCG	13060	0.0	5.654746	94-95
AGAGCAC	26520	0.0	5.6500425	94-95
AGCACAC	23115	0.0	5.311198	94-95
GAGCACA	27080	0.0	5.1561384	94-95