FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004720996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004720996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21630195
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA421900.08.6952394-95
ACACGTC144400.08.56707694-95
GATCGGA449250.08.48827794-95
CGTCTGA110000.08.24579994-95
AGATCGG506800.08.1896894-95
GCACACG211800.08.17266494-95
TCGGAAG405650.08.153831594-95
TAGATCG161550.07.819279794-95
CACACGT180000.07.756519394-95
CACGTCT150600.07.58371894-95
ACGTCTG133800.07.40017594-95
CGGAAGA400200.07.374994-95
AAGATCG174150.07.00812394-95
CAGATCG161600.06.86179394-95
AGCACAC305550.06.488827794-95
AGAGCAC350450.06.2537194-95
GAGATCG180600.05.929538294-95
GAGCACA351700.05.87366294-95
GAAGAGC495450.05.62639694-95
AAGAGCA468800.05.449877394-95
Produced by FastQC (version 0.11.5)