EGAF00004721000 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721000
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23310344
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	36485	0.0	9.280439	94-95
GATCGGA	39185	0.0	9.228761	94-95
AGATCGG	44215	0.0	8.667567	94-95
TAGATCG	13785	0.0	8.491874	94-95
TCGGAAG	35700	0.0	8.453581	94-95
ACACGTC	12985	0.0	8.027604	94-95
CGGAAGA	35340	0.0	7.672959	94-95
CACACGT	16175	0.0	7.633477	94-95
CGTCTGA	9800	0.0	7.462563	94-95
ACGTCTG	12160	0.0	7.166314	94-95
GCACACG	19350	0.0	6.9822383	94-95
CACGTCT	14085	0.0	6.7937813	94-95
AAGATCG	14965	0.0	6.5370803	94-95
CAGATCG	15955	0.0	6.473748	94-95
GAGATCG	18235	0.0	5.911714	94-95
AGAGCAC	31595	0.0	5.5838513	94-95
AGCACAC	27970	0.0	5.3567357	94-95
GAAGAGC	47260	0.0	5.2804675	94-95
AAGAGCA	43435	0.0	5.0184107	94-95