FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22449309
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA409900.09.2720494-95
TAGATCG167650.09.14154694-95
TCGGAAG396150.09.09680494-95
GATCGGA445200.08.93652394-95
ACACGTC129100.08.8942694-95
AGATCGG503250.08.88153194-95
CGGAAGA390600.08.69156694-95
CGTCTGA95100.08.45687594-95
CACACGT163900.08.32299494-95
GCACACG189000.07.58168794-95
ACGTCTG119600.07.517937794-95
CACGTCT136350.07.272970794-95
CAGATCG168600.07.13413194-95
AAGATCG171300.07.049382794-95
GAGATCG180250.06.278180694-95
CGCGTAA4550.00212394426.25691994-95
AGAGCAC333950.06.095320794-95
AGCACAC291100.06.022723794-95
GAGCACA342700.05.586632794-95
GAAGAGC479950.05.49666894-95
Produced by FastQC (version 0.11.5)