EGAF00004721042 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721042
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22198562
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	37410	0.0	8.728529	94-95
AGATCGG	42295	0.0	8.630001	94-95
ATCGGAA	34380	0.0	8.392599	94-95
TCGGAAG	34260	0.0	8.089274	94-95
TAGATCG	13230	0.0	7.7903314	94-95
CGGAAGA	34510	0.0	7.727889	94-95
CGTCTGA	9395	0.0	7.6589966	94-95
ACACGTC	12785	0.0	7.615689	94-95
ACGTCTG	11830	0.0	7.547952	94-95
CACACGT	16315	0.0	6.957719	94-95
CACGTCT	13430	0.0	6.8432283	94-95
GCACACG	18560	0.0	6.6791096	94-95
AAGATCG	14580	0.0	6.6618032	94-95
CAGATCG	14855	0.0	6.6343975	94-95
GAGATCG	17140	0.0	6.110177	94-95
AGAGCAC	31170	0.0	5.6836596	94-95
AAGAGCA	41565	0.0	5.222091	94-95
GAAGAGC	45695	0.0	5.2074494	94-95
AGCACAC	26960	0.0	5.1530223	94-95