EGAF00004721051 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721051
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24362368
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTGTA	9820	0.0	9.485291	94-95
AGCGTCG	13870	0.0	9.251099	94-95
GATCGGA	36255	0.0	8.5136795	94-95
GCGTCGT	12595	0.0	8.508528	94-95
GTCGTGT	11565	0.0	8.403375	94-95
CGTCGTG	11875	0.0	8.3841	94-95
ATCGGAA	33960	0.0	8.312369	94-95
CGTGTAG	10045	0.0	8.231999	94-95
GAGCGTC	18015	0.0	8.164554	94-95
AGAGCGT	19775	0.0	8.146841	94-95
AGATCGG	41245	0.0	8.054006	94-95
AAGAGCG	23460	0.0	7.8395114	94-95
TCGGAAG	33970	0.0	7.8202796	94-95
TAGATCG	13505	0.0	7.724066	94-95
CGGAAGA	34535	0.0	7.224468	94-95
AAGATCG	14010	0.0	6.631544	94-95
CAGATCG	15170	0.0	5.732863	94-95
GAGATCG	17975	0.0	5.314142	94-95
GTGTAGG	14460	0.0	5.242017	94-95