FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21482231
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA264450.08.17271294-95
TAGATCG104450.08.09487294-95
TCGGAAG267250.08.04265294-95
AGATCGG310800.07.98552994-95
GATCGGA275650.07.944038494-95
CGGAAGA271400.07.228340694-95
CGTCTGA83500.06.94019694-95
GCACACG155700.06.726953594-95
CACACGT135100.06.45177494-95
ACACGTC103900.06.400455594-95
ACGTCTG96950.06.295840394-95
AAGATCG118900.06.09237294-95
CACGTCT112000.05.937565394-95
CAGATCG114350.05.46245694-95
AGAGCAC264750.05.15822594-95
GAGATCG135950.05.048786694-95
Produced by FastQC (version 0.11.5)