EGAF00004721063 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721063
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21482231
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTCGT	9885	0.0	9.949449	94-95
AGCGTCG	11170	0.0	9.48543	94-95
CGTCGTG	9255	0.0	9.009611	94-95
TCGTGTA	7645	0.0	8.234623	94-95
ATCGGAA	26305	0.0	8.100829	94-95
GTCGTGT	8505	0.0	7.9606013	94-95
GATCGGA	27775	0.0	7.8773637	94-95
AGATCGG	31335	0.0	7.831519	94-95
TCGGAAG	26520	0.0	7.7932944	94-95
GAGCGTC	14520	0.0	7.5751233	94-95
AGAGCGT	15810	0.0	7.528028	94-95
AAGAGCG	18930	0.0	7.466923	94-95
CGTGTAG	7835	0.0	7.27692	94-95
TAGATCG	10040	0.0	7.26407	94-95
CGGAAGA	27165	0.0	7.0485644	94-95
AAGATCG	12025	0.0	6.143992	94-95
GAGATCG	13655	0.0	5.8803115	94-95
CAGATCG	11765	0.0	5.7749662	94-95
GTGTAGG	12075	0.0	5.115187	94-95