EGAF00004721068 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721068
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20647581
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	32205	0.0	8.310919	94-95
ATCGGAA	30200	0.0	8.280754	94-95
TCGGAAG	30100	0.0	8.032111	94-95
AGATCGG	36370	0.0	7.966452	94-95
TAGATCG	11190	0.0	7.6829305	94-95
CGGAAGA	30495	0.0	7.624344	94-95
CGTCTGA	8835	0.0	7.553499	94-95
ACACGTC	11495	0.0	7.417096	94-95
ACGTCTG	10985	0.0	7.0047617	94-95
CACACGT	14575	0.0	6.615549	94-95
GCACACG	16375	0.0	6.5409923	94-95
CACGTCT	12510	0.0	6.397658	94-95
AAGATCG	12790	0.0	5.960503	94-95
CAGATCG	13170	0.0	5.770489	94-95
GAGATCG	14795	0.0	5.570099	94-95
AGAGCAC	28455	0.0	5.4667745	94-95
AGCACAC	23985	0.0	5.168675	94-95