FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20655449
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA353250.09.29570794-95
GATCGGA383800.09.11255594-95
AGATCGG429550.08.40179894-95
TCGGAAG340400.08.39109194-95
TAGATCG150000.08.24686494-95
ACACGTC119150.08.21004594-95
CGTCTGA87550.08.16305494-95
GCACACG168300.07.942672794-95
CACACGT147200.07.85531494-95
CGGAAGA337850.07.695424694-95
ACGTCTG109400.07.444219694-95
CACGTCT126450.06.60946394-95
AAGATCG142900.06.51322794-95
AGAGCAC302150.06.365093794-95
CAGATCG134800.06.20010992-93
AGCACAC260950.05.968826394-95
GAGATCG163000.05.82659494-95
GAGCACA300250.05.764835494-95
GAAGAGC429900.05.627935494-95
AAGAGCA409450.05.294345494-95
Produced by FastQC (version 0.11.5)