EGAF00004721093 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721093
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22701443
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	10965	0.0	9.057548	94-95
GATCGGA	29385	0.0	8.870007	94-95
AGATCGG	33205	0.0	8.765478	94-95
ATCGGAA	27385	0.0	8.467985	94-95
GCGTCGT	9895	0.0	8.164059	94-95
AAGAGCG	18860	0.0	8.163499	94-95
TAGATCG	10055	0.0	8.034148	94-95
GAGCGTC	14105	0.0	7.98451	94-95
TCGGAAG	27510	0.0	7.902663	94-95
TCGTGTA	7850	0.0	7.899759	94-95
AGAGCGT	15940	0.0	7.885157	94-95
GTCGTGT	8860	0.0	7.5891953	94-95
CGTCGTG	9175	0.0	7.5876017	94-95
CGGAAGA	28295	0.0	7.481884	94-95
CGTGTAG	8345	0.0	7.032563	94-95
AAGATCG	12640	0.0	6.973805	94-95
CAGATCG	13340	0.0	6.6791077	94-95
GAGATCG	14290	0.0	5.653139	94-95
GTGTAGG	12695	0.0	5.053288	94-95