EGAF00004721119 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721119
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23673051
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	9190	0.0	8.714631	94-95
CGTCGTG	8005	0.0	8.460931	94-95
GATCGGA	23570	0.0	8.439184	94-95
ATCGGAA	22160	0.0	8.279081	94-95
GCGTCGT	8165	0.0	8.23692	94-95
TCGTGTA	6820	0.0	7.8403015	94-95
GTCGTGT	7825	0.0	7.8051887	94-95
AGATCGG	26575	0.0	7.780018	94-95
GAGCGTC	12405	0.0	7.7396126	94-95
AGAGCGT	13765	0.0	7.7173095	94-95
AAGAGCG	16235	0.0	7.1579914	94-95
TCGGAAG	23625	0.0	7.0816665	94-95
TAGATCG	8315	0.0	7.059425	94-95
CGGAAGA	24565	0.0	6.55915	94-95
CGTGTAG	7395	0.0	6.202314	94-95
CAGATCG	11055	0.0	5.524704	94-95
AAGATCG	10885	0.0	5.501825	94-95