FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23313101
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA444750.09.18668494-95
GATCGGA481800.08.96313294-95
AGATCGG544400.08.71743194-95
TCGGAAG433350.08.3381594-95
ACACGTC154850.08.17165394-95
TAGATCG160050.08.1434994-95
CGTCTGA112450.07.98042894-95
ACGTCTG139550.07.808664394-95
CGGAAGA431400.07.621904494-95
CACGTCT159950.07.3470894-95
CACACGT193050.07.267943494-95
CAGATCG190350.07.034287594-95
GCACACG224850.06.94747394-95
GAGATCG214350.06.855845594-95
AAGATCG178100.06.718316694-95
AGAGCAC363100.06.62987894-95
GAAGAGC538200.05.932974394-95
AGCACAC316250.05.81037694-95
GAGCACA369700.05.76661294-95
AAGAGCA481900.05.744278494-95
Produced by FastQC (version 0.11.5)