FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24433037
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA382950.09.86762494-95
ATCGGAA351350.09.82223294-95
AGATCGG433700.09.2167894-95
TCGGAAG345400.08.99435394-95
TAGATCG143350.08.38373194-95
CGGAAGA346450.08.06215894-95
ACACGTC116900.07.923820594-95
AAGATCG153200.06.976511594-95
GCACACG171400.06.92857294-95
CACACGT148250.06.840970594-95
CAGATCG152100.06.667809594-95
ACGTCTG107200.06.49168494-95
CACGTCT127150.06.425791394-95
CGTCTGA90150.06.375792594-95
AGAGCAC311450.06.215181494-95
GAGATCG175000.05.97171694-95
AGCACAC268950.05.466428394-95
GAGCACA318100.05.4132694-95
AAGAGCA435050.05.10454494-95
GAAGAGC463350.05.079828394-95
Produced by FastQC (version 0.11.5)