EGAF00004721148 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721148
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18460307
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	31455	0.0	8.5652485	94-95
ATCGGAA	29270	0.0	8.410581	94-95
TAGATCG	11755	0.0	8.31239	94-95
ACACGTC	10650	0.0	8.195011	94-95
AGATCGG	35150	0.0	8.062948	94-95
GCACACG	14965	0.0	7.860611	94-95
TCGGAAG	28710	0.0	7.6329093	94-95
CGGAAGA	28995	0.0	7.5906014	94-95
CGTCTGA	7890	0.0	7.5448055	94-95
CACACGT	13280	0.0	7.5007133	94-95
CACGTCT	11265	0.0	7.0528545	94-95
ACGTCTG	9815	0.0	6.9832706	94-95
AAGATCG	11985	0.0	6.5895767	94-95
CAGATCG	12730	0.0	6.371608	94-95
GAGATCG	12920	0.0	5.929135	94-95
AGAGCAC	26345	0.0	5.8604927	94-95
AGCACAC	22585	0.0	5.607541	94-95
GAGCACA	26895	0.0	5.2380085	94-95
GAAGAGC	38585	0.0	5.077067	94-95