EGAF00004721156 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721156
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21337418
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	30620	0.0	8.847244	94-95
GATCGGA	32300	0.0	8.592896	94-95
ACACGTC	11705	0.0	8.336773	94-95
TCGGAAG	30420	0.0	7.828333	94-95
AGATCGG	36340	0.0	7.8205404	94-95
TAGATCG	11325	0.0	7.3795857	92-93
CGTCTGA	8590	0.0	7.1587	94-95
CGGAAGA	30845	0.0	7.1123767	94-95
CACACGT	15225	0.0	7.001911	94-95
AAGATCG	12990	0.0	6.6713123	94-95
CACGTCT	12325	0.0	6.491881	94-95
ACGTCTG	10845	0.0	6.4364343	94-95
CGTACGC	1065	1.2751116E-9	6.0192404	94-95
GCACACG	16915	0.0	5.9373946	94-95
CAGATCG	13030	0.0	5.7215385	94-95
GAGATCG	15430	0.0	5.58558	94-95
AGAGCAC	28680	0.0	5.472048	94-95