FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18953473
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA106100.09.48842794-95
ACACGTC153300.09.246469594-95
ATCGGAA481500.08.98453994-95
TCGGAAG460500.08.90959294-95
GATCGGA523800.08.84826494-95
ACGTCTG132000.08.6339894-95
AGATCGG586150.08.49441394-95
CACGTCT153250.08.38186294-95
CGGAAGA445200.08.34113894-95
CACACGT186800.08.33816994-95
GCACACG218100.08.29550894-95
TAGATCG186550.07.86569294-95
AAGATCG174850.07.482206394-95
AGAGCAC361250.07.150966694-95
AGCACAC301650.07.013230394-95
GAGATCG205750.06.647010394-95
CAGATCG189000.06.63308994-95
GAGCACA351100.06.505609594-95
AAGAGCA469850.06.443097694-95
GAAGAGC512500.06.37019294-95
Produced by FastQC (version 0.11.5)