FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004721167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004721167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18953473
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG190100.010.56181794-95
TCGTGTA117800.010.50888294-95
GCGTCGT165250.010.38149394-95
GTCGTGT135750.010.11700794-95
CGTCGTG152250.010.00379594-95
CGTGTAG114800.09.85210694-95
AAGAGCG304450.09.46692494-95
GAGCGTC233550.09.217483594-95
AGAGCGT260450.09.214272594-95
ATCGGAA480150.08.98180994-95
TCGGAAG458350.08.86986294-95
GATCGGA526700.08.82859594-95
AGATCGG586700.08.42791394-95
CGGAAGA443150.08.37518494-95
TAGATCG177700.07.88912194-95
CAGATCG192850.07.19543894-95
GTGTAGG145250.07.017868594-95
GAGATCG204350.06.70911594-95
AAGATCG182800.06.460174694-95
GAAGAGC506600.06.38816394-95
Produced by FastQC (version 0.11.5)