EGAF00004721168 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004721168
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21383183
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGGAA	29615	0.0	9.00192	94-95
GATCGGA	31810	0.0	8.895233	94-95
TCGGAAG	29185	0.0	8.695701	94-95
AGATCGG	35965	0.0	8.5138645	94-95
TAGATCG	12255	0.0	8.360861	94-95
ACACGTC	10710	0.0	7.795316	94-95
CGGAAGA	29665	0.0	7.755466	94-95
CGTCTGA	8060	0.0	7.474449	94-95
ACGTCTG	10140	0.0	6.8768554	94-95
CACACGT	13515	0.0	6.703904	94-95
GCACACG	15530	0.0	6.5671587	94-95
CACGTCT	11420	0.0	6.396835	94-95
AAGATCG	12195	0.0	6.359844	94-95
ACCGCGC	4205	0.0	6.0956306	1
CAGATCG	13930	0.0	6.0444636	94-95
GAGATCG	13695	0.0	5.836445	94-95
AGAGCAC	27140	0.0	5.566858	94-95
GAAGAGC	40780	0.0	5.135633	94-95
ACTTCGC	3105	5.311449E-10	5.0447917	1